************
Installation
************
.. _astropy-main-req:
Requirements
============
``astropy`` has the following strict requirements:
- `Python `_ |minimum_python_version| or later
- `Numpy`_ |minimum_numpy_version| or later
``astropy`` also depends on other packages for optional features:
- `scipy`_ |minimum_scipy_version| or later: To power a variety of features
in several modules.
- `h5py `_: To read/write
:class:`~astropy.table.Table` objects from/to HDF5 files.
- `BeautifulSoup `_: To read
:class:`~astropy.table.table.Table` objects from HTML files.
- `html5lib `_: To read
:class:`~astropy.table.table.Table` objects from HTML files using the
`pandas `_ reader.
- `bleach `_: Used to sanitize text when
disabling HTML escaping in the :class:`~astropy.table.Table` HTML writer.
- `PyYAML `_ |minimum_yaml_version| or later: To read/write
:class:`~astropy.table.Table` objects from/to the Enhanced CSV ASCII table
format and to serialize mixins for various formats.
- `xmllint `_: To validate VOTABLE XML files.
This is a command line tool installed outside of Python.
- `pandas `_: To convert
:class:`~astropy.table.Table` objects from/to pandas DataFrame objects.
Version 0.14 or higher is required to use the :ref:`table_io_pandas`
I/O functions to read/write :class:`~astropy.table.Table` objects.
- `bintrees `_ for faster ``FastRBT`` and
``FastBST`` indexing engines with ``Table``, although these will still be
slower in most cases than the default indexing engine.
- `sortedcontainers `_ for faster
``SCEngine`` indexing engine with ``Table``, although this may still be
slower in some cases than the default indexing engine.
- `pytz `_: To specify and convert between
timezones.
- `jplephem `_: To retrieve JPL
ephemeris of Solar System objects.
- `matplotlib `_ 2.0 or later: To provide plotting
functionality that `astropy.visualization` enhances.
- `setuptools `_: Used for discovery of
entry points which are used to insert fitters into `astropy.modeling.fitting`.
- `mpmath `_: Used for the 'kraft-burrows-nousek'
interval in `~astropy.stats.poisson_conf_interval`.
- `asdf `_ |minimum_asdf_version| or later: Enables the
serialization of various Astropy classes into a portable, hierarchical,
human-readable representation.
- `bottleneck `_: Improves the performance
of sigma-clipping and other functionality that may require computing
statistics on arrays with NaN values.
However, note that these packages require installation only if those particular
features are needed. ``astropy`` will import even if these dependencies are not
installed.
The following packages can optionally be used when testing:
- `pytest-astropy `_: See
:ref:`sourcebuildtest`
- `pytest-xdist `_: Used for
distributed testing.
- `pytest-mpl `_: Used for testing
with Matplotlib figures.
- `objgraph `_: Used only in tests to test for reference leaks.
- `IPython `__: Used for testing the notebook interface of
`~astropy.table.Table`.
- `coverage `_: Used for code coverage
measurements.
- `skyfield `_: Used for testing Solar System
coordinates.
- `spgp4 `_: Used for testing satellite positions.
- `tox `_: Used to automate testing
and documentation builds.
Installing ``astropy``
======================
Using pip
---------
.. warning::
Users of the Anaconda Python distribution should follow the instructions
for :ref:`anaconda_install`.
To install ``astropy`` with `pip `__, run::
pip install astropy
If you want to make sure none of your existing dependencies get upgraded, you
can also do::
pip install astropy --no-deps
On the other hand, if you want to install ``astropy`` along with all of the
available optional dependencies, you can do::
pip install astropy[all]
In most cases, this will install a pre-compiled version (called a *wheel*) of
astropy, but if you are using a very recent version of Python, if a new version
of astropy has just been released, or if you are building astropy for a platform
that is not common, astropy will be installed from a source file. Note that in
this case you will need a C compiler (e.g., ``gcc`` or ``clang``) to be installed
(see `Building from source`_ below) for the installation to succeed.
If you get a ``PermissionError`` this means that you do not have the required
administrative access to install new packages to your Python installation. In
this case you may consider using the ``--user`` option to install the package
into your home directory. You can read more about how to do this in the `pip
documentation `_.
Alternatively, if you intend to do development on other software that uses
``astropy``, such as an affiliated package, consider installing ``astropy`` into a
:ref:`virtualenv`.
Do **not** install ``astropy`` or other third-party packages using ``sudo``
unless you are fully aware of the risks.
.. _anaconda_install:
Using Conda
-----------
``astropy`` is installed by default with the `Anaconda Distribution
`_. To update to the latest version run::
conda update astropy
There may be a delay of a day or two between when a new version of ``astropy``
is released and when a package is available for Anaconda. You can check
for the list of available versions with ``conda search astropy``.
.. warning::
Attempting to use `pip `__ to upgrade your installation
of ``astropy`` may result in a corrupted installation.
.. _testing_installed_astropy:
Testing an Installed ``astropy``
--------------------------------
The easiest way to test if your installed version of ``astropy`` is running
correctly is to use the :ref:`astropy.test()` function::
import astropy
astropy.test()
The tests should run and print out any failures, which you can report at
the `Astropy issue tracker `_.
This way of running the tests may not work if you do it in the ``astropy`` source
distribution. See :ref:`sourcebuildtest` for how to run the tests from the
source code directory, or :ref:`running-tests` for more details.
Building from Source
====================
Prerequisites
-------------
You will need a compiler suite and the development headers for Python in order
to build ``astropy``. You do not need to install any other specific build
dependencies (such as `Cython `_ or
`jinja2 `_) since these are
declared in the ``pyproject.toml`` file and will be automatically installed into
a temporary build environment by pip.
Prerequisites for Linux
-----------------------
On Linux, using the package manager for your distribution will usually be the
easiest route to making sure you have the prerequisites to build ``astropy``. In
order to build from source, you will need the Python development
package for your Linux distribution, as well as pip.
For Debian/Ubuntu::
sudo apt-get install python3-dev python3-numpy-dev python3-setuptools cython3 python3-jinja2 python3-pytest-astropy
For Fedora/RHEL::
sudo yum install python3-devel python3-numpy python3-setuptools python3-Cython python3-jinja2 python3-pytest-astropy
.. note:: Building the developer version of ``astropy`` may require
newer versions of the above packages than are available in
your distribution's repository. If so, you could either try
a more up to date version (such as Debian ``testing``), or
install more up-to-date versions using ``pip`` or ``conda``
in a virtual environment.
Prerequisites for Mac OS X
--------------------------
On MacOS X you will need the XCode command line tools which can be installed
using::
xcode-select --install
Follow the onscreen instructions to install the command line tools required.
Note that you do **not** need to install the full XCode distribution (assuming
you are using MacOS X 10.9 or later).
The `instructions for building NumPy from source
`_ are a good
resource for setting up your environment to build Python packages.
Obtaining the Source Packages
-----------------------------
Source Packages
^^^^^^^^^^^^^^^
The latest stable source package for ``astropy`` can be `downloaded here
`_.
Development Repository
^^^^^^^^^^^^^^^^^^^^^^
The latest development version of ``astropy`` can be cloned from GitHub
using this command::
git clone git://github.com/astropy/astropy.git
If you wish to participate in the development of ``astropy``, see
:ref:`developer-docs`. The present document covers only the basics necessary to
installing ``astropy``.
Building and Installing
-----------------------
To build and install ``astropy`` (from the root of the source tree)::
pip install .
If you install in this way and you make changes to the code, you will need to
re-run the install command for changes to be reflected. Alternatively, you can
use::
pip install -e .
which installs ``astropy`` in develop/editable mode -- this then means that
changes in the code are immediately reflected in the installed version.
Troubleshooting
---------------
If you get an error mentioning that you do not have the correct permissions to
install ``astropy`` into the default ``site-packages`` directory, you can try
installing with::
pip install . --user
which will install into a default directory in your home directory.
.. _external_c_libraries:
External C Libraries
^^^^^^^^^^^^^^^^^^^^
The ``astropy`` source ships with the C source code of a number of
libraries. By default, these internal copies are used to build
``astropy``. However, if you wish to use the system-wide installation of
one of those libraries, you can set environment variables with the
pattern ``ASTROPY_USE_SYSTEM_???`` to ``1`` when building/installing
the package.
For example, to build ``astropy`` using the system expat, use::
ASTROPY_USE_SYSTEM_EXPAT=1 pip install -e .
To build using all of the system libraries, use::
ASTROPY_USE_SYSTEM_ALL=1 pip install -e .
The C libraries currently bundled with ``astropy`` include:
- `wcslib `_ see
``cextern/wcslib/README`` for the bundled version. To use the
system version, set ``ASTROPY_USE_SYSTEM_WCSLIB=1``.
- `cfitsio `_ see
``cextern/cfitsio/changes.txt`` for the bundled version. To use the
system version, set ``ASTROPY_USE_SYSTEM_CFITSIO=1``.
- `erfa `_ see ``cextern/erfa/README.rst`` for the
bundled version. To use the system version, set ``ASTROPY_USE_SYSTEM_ERFA=1``.
- `expat `_ see ``cextern/expat/README`` for the
bundled version. To use the system version, set ``ASTROPY_USE_SYSTEM_EXPAT=1``.
Installing ``astropy`` into CASA
--------------------------------
If you want to be able to use ``astropy`` inside `CASA
`_, the easiest way is to do so from inside CASA.
First, we need to make sure `pip `__ is
installed. Start up CASA as normal, and then type::
CASA <2>: from setuptools.command import easy_install
CASA <3>: easy_install.main(['--user', 'pip'])
Now, quit CASA and re-open it, then type the following to install ``astropy``::
CASA <2>: import subprocess, sys
CASA <3>: subprocess.check_call([sys.executable, '-m', 'pip', 'install', '--user', 'astropy'])
Then close CASA again and open it, and you should be able to import ``astropy``::
CASA <2>: import astropy
Any ``astropy`` affiliated package can be installed the same way (e.g. the
`spectral-cube `_ or other
packages that may be useful for radio astronomy).
.. note:: The above instructions have not been tested on all systems.
We know of a few examples that do work, but that is not a guarantee
that this will work on all systems. If you install ``astropy`` and begin to
encounter issues with CASA, please look at the `known CASA issues
`_
and if you do not encounter your issue there, please post a new one.
.. _builddocs:
Building Documentation
----------------------
.. note::
Building the documentation is in general not necessary unless you are
writing new documentation or do not have internet access, because
the latest (and archive) versions of Astropy's documentation should
be available at `docs.astropy.org `_ .
Dependencies
^^^^^^^^^^^^
Building the documentation requires the ``astropy`` source code and some
additional packages. The easiest way to build the documentation is to use `tox
`_ as detailed in
:ref:`astropy-doc-building`. If you are happy to do this, you can skip the rest
of this section.
On the other hand, if you wish to call Sphinx manually to build the
documentation, you will need to make sure that a number of dependencies are
installed. If you use conda, the easiest way to install the dependencies is
with::
conda install -c astropy sphinx-astropy
Without conda, you install the dependencies by specifying ``[docs]`` when
installing ``astropy`` with pip::
pip install -e '.[docs]'
You can alternatively install the `sphinx-astropy
`_ package with pip::
pip install sphinx-astropy
In addition to providing configuration common to packages in the Astropy
ecosystem, this package also serves as a way to automatically get the main
dependencies, including:
* `Sphinx `_ - the main package we use to build
the documentation
* `astropy-sphinx-theme `_ -
the default 'bootstrap' theme used by ``astropy`` and a number of affiliated
packages
* `sphinx-automodapi `_ - an extension
that makes it easy to automatically generate API documentation
* `sphinx-gallery `_ - an
extension to generate example galleries
* `numpydoc `_ - an extension to parse
docstrings in NumPyDoc format
* `pillow `_ - used in one of the examples
* `Graphviz `_ - generate inheritance graphs (available
as a conda package or a system install but not in pip)
.. Note::
Both of the ``pip`` install methods above do not include `Graphviz
`_. If you do not install this package separately
then the documentation build process will produce a very large number of
lengthy warnings (which can obscure bona fide warnings) and also not
generate inheritance graphs.
.. _astropy-doc-building:
Building
^^^^^^^^
There are two ways to build the Astropy documentation. The easiest way is to
execute the following tox command (from the ``astropy`` source directory)::
tox -e build_docs
If you do this, you do not need to install any of the documentation dependencies
as this will be done automatically. The documentation will be built in the
``docs/_build/html`` directory, and can be read by pointing a web browser to
``docs/_build/html/index.html``.
Alternatively, you can do::
cd docs
make html
And the documentation will be generated in the same location. Note that
this uses the installed version of astropy, so if you want to make sure
the current repository version is used, you will need to install it with
e.g.::
pip install -e .[docs]
before changing to the ``docs`` directory.
In the second way, LaTeX documentation can be generated by using the command::
make latex
The LaTeX file ``Astropy.tex`` will be created in the ``docs/_build/latex``
directory, and can be compiled using ``pdflatex``.
Reporting Issues/Requesting Features
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
As mentioned above, building the documentation depends on a number of Sphinx
extensions and other packages. Since it is not always possible to know which
package is causing issues or would need to have a new feature implemented, you
can open an issue in the `core astropy package issue
tracker `_. However, if you wish, you
can also open issues in the repositories for some of the dependencies:
* For requests/issues related to the appearance of the docs (e.g. related to
the CSS), you can open an issue in the `astropy-sphinx-theme issue tracker
`_.
* For requests/issues related to the auto-generated API docs which appear to
be general issues rather than an issue with a specific docstring, you can use
the `sphinx-automodapi issue tracker
`_.
* For issues related to the default configuration (e.g which extensions are
enabled by default), you can use the `sphinx-astropy issue tracker
`_.
.. _sourcebuildtest:
Testing a Source Code Build of ``astropy``
------------------------------------------
The easiest way to run the tests in a source checkout of ``astropy``
is to use `tox `_::
tox -e test-alldeps
There are also alternative methods of :ref:`running-tests` if you
would like more control over the testing process.
.. include:: development/workflow/known_projects.inc